LINK 2 OF 10
DOCUMENTATION BURDEN IS DESTROYING PHYSICIANS
Because the encounter note determines payment, physicians must invest extraordinary time in documentation. The evidence reveals a healthcare workforce that spends more time writing about patient care than delivering it.
The 2:1 Administrative-to-Clinical Ratio
Physicians spend nearly twice as much time on administrative work as on patient care. Sinsky et al.’s landmark 2016 time-motion study published in Annals of Internal Medicine found that physicians spent 27.0 percent of their office day on direct clinical face time versus 49.2 percent on EHR and desk work: roughly two hours of paperwork for every hour with a patient. Even while in the exam room, 37 percent of physician time went to EHR documentation rather than the patient. Arndt et al. (Annals of Family Medicine, 2017) confirmed this with EHR audit log data: 142 family medicine physicians in one Wisconsin health system spent an average of 86 minutes per weekday on EHR tasks after clinic hours. That is over 7 hours per week, an unpaid extra workday.
“Pajama Time”: The Unpaid Second Shift
After-hours documentation is endemic, not anecdotal. AMA’s 2024 Organizational Biopsy survey of nearly 18,000 physicians found 22.5 percent spent more than 8 hours weekly on EHR work outside of office hours. That share was 20.9 percent in both 2022 and 2023 and rose in 2024, even as overall burnout fell from 53 percent to 43.2 percent over the same period, signaling a persistent structural problem rather than a transitional adjustment period. Overhage and McCallie’s 2020 analysis in Annals of Internal Medicine of 100 million patient encounters across 155,000 physicians found physicians spent an average of 16 minutes and 14 seconds per encounter on all EHR activities, with the highest specialty groups averaging 18 to 22 minutes per encounter.
Notes Several Times Longer Than in Peer Countries
American clinical notes are several times longer than those written by physicians in other countries using the same EHR software. Downing, Bates, and Longhurst reported in a 2018 Annals of Internal Medicine commentary, drawing on Epic data, that U.S. notes were roughly four times as long as notes written by physicians in other countries. The authors attributed this directly to compliance and reimbursement documentation requirements. Rule et al.’s analysis of 2.7 million outpatient notes in JAMA Network Open found median note length increased 60.1 percent from 401 words (2009) to 642 words (2018). Wang et al.’s study in JAMA Internal Medicine (2017) found only 18 percent of note text was typed manually; 46 percent was copied from prior notes and 36 percent was auto-imported. Despite CMS’s 2021 E/M coding reform intended to reduce documentation burden, Epic Research found note length actually increased 8.1 percent from 2020 to 2023.
2 : 1. Ratio of administrative time to direct patient care for physicians, per Sinsky et al., Annals of Internal Medicine (2016).
This burden exists because the note is the ledger. The thousand-plus hours per year physicians spend documenting are not a side effect. They are the price the payment system charges to process the encounter note.
Sources: Sinsky et al., Annals of Internal Medicine (2016); Arndt et al., Annals of Family Medicine (2017); Overhage & McCallie, Annals of Internal Medicine (2020); AMA Organizational Biopsy Survey (2024); Downing, Bates & Longhurst, Annals of Internal Medicine (2018); Rule et al., JAMA Network Open (2021); Wang et al., JAMA Internal Medicine (2017); Epic Research (2023)
LINK 3 OF 10
BURNOUT DEGRADES CLINICAL DECISION-MAKING
The documentation burden identified in Link 2 is a primary driver of a physician burnout crisis that now affects a majority of practicing physicians in the United States. Research has linked burnout to more medical errors, more defensive medicine, and substantial unnecessary costs.
The Burnout Epidemic
Physician burnout has reached crisis levels. The Physicians Foundation 2024 survey of 1,723 physicians, residents, and medical students found 60 percent report frequent burnout, a majority for the fourth straight year and up from about 40 percent in 2018. The Medscape 2024 Physician Burnout and Depression Report found 49 percent of physicians reported burnout, with emergency medicine (63 percent), internal medicine (50 percent), and pediatrics (51 percent) among the hardest hit. Most critically for this thesis, 62 percent of burned-out physicians identified bureaucratic tasks, primarily EHR documentation and charting, as the leading contributor to burnout. Patient complexity, malpractice risk, and compensation each ranked well below.
The Burnout-Error Connection
Burnout is associated with a higher rate of self-reported medical errors and perceived reductions in safety. West et al. found in a 2006 JAMA study of medical residents that distress was prospectively associated with perceived medical errors. (A frequently cited 2018 meta-analysis on this topic was retracted in 2020 and is therefore not included here; the remaining primary studies independently support the association.)
Defensive Medicine: The Cost of Fear
In a JAMA survey of 824 Pennsylvania physicians in six high-liability specialties (emergency medicine, orthopedic surgery, obstetrics/gynecology, and similar fields), Studdert et al. found 93 percent reported practicing some form of defensive medicine. Physician self-assessments summarized in public policy reporting have suggested that roughly one-fifth of medical care is unnecessary, a pattern broadly consistent with Institute of Medicine estimates that the U.S. health system contains hundreds of billions of dollars in wasteful or low-value spending each year. Estimates of the total cost of the medical liability system reach $55.6 billion annually (Mello et al., Health Affairs, 2010, based on 2008 data), of which about $45.6 billion is defensive medicine, with the rest in litigation costs and insurance overhead. Industry-sponsored physician surveys by Jackson Healthcare have put the figure much higher, between $650 and $850 billion annually when accounting for all downstream effects, but these are physician self-reported projections rather than peer-reviewed estimates and should not be treated as comparable to the Mello et al. figure.
Practice size appears to affect burnout rates. A 2018 New York University study published in the Journal of the American Board of Family Medicine found burnout rates in small independent practices of five or fewer physicians at 13.5 percent, compared with a national average closer to 54 percent at the time. This fourfold difference was attributed to greater autonomy, deeper patient relationships, fewer work hours, and higher adaptive reserve in small practices.
Burnout degrades the clinical decisions captured in the next encounter note, which reduces the quality and accuracy of the document that sets the next payment, which drives the next hour of after-hours charting. The loop tightens inside the note.
Sources: Physicians Foundation (2024); Medscape Physician Burnout and Depression Report (2024); West et al., JAMA (2006); Studdert et al., JAMA (2005); Mello et al., Health Affairs (2010); Institute of Medicine / National Academies reporting on wasteful spending; Shelley et al., Journal of the American Board of Family Medicine (2018)
LINK 4 OF 10
REIMBURSEMENT IS DECLINING WHILE COSTS EXPLODE
While documentation demands escalate and burnout intensifies, the reimbursement physicians receive for this work has declined in real terms, even as practice operating costs have surged.
The Great Physician Pay Cut
Medicare physician payments have declined roughly 33 percent in inflation-adjusted terms since 2001, according to AMA analyses of Medicare Economic Index data. While the cost of running a medical practice increased approximately 59 percent from 2001 to 2025, the Medicare physician conversion factor fell about 15.5 percent in nominal terms, from $38.26 in 2001 to $32.35 in 2025. The 2025 Medicare physician fee schedule conversion factor is $32.35, down 2.83 percent from 2024’s $33.29. The AMA notes that if the conversion factor had kept pace with practice cost inflation since 2001, it would be substantially higher than today’s figure (AMA analysis suggests the cumulative real cut is roughly one-third). The AMA has formally described physician private practice as “unraveling” under the combined weight of flat payment, rising costs, and administrative burdens.
The Overhead Trap
Practice overhead consumes roughly 64 percent of revenue, according to MGMA’s 2018 benchmark data. The same data shows staff costs alone represent approximately 26 percent of revenues and about 41 percent of total overhead. Combined with rent, malpractice insurance, EHR systems, billing staff, and supplies, the typical practice retains only about 36 cents of every dollar collected. A primary care physician collecting $800,000 in annual revenue may take home $250,000 after overhead, less than many mid-career software engineers, and typically with over $200,000 in medical school debt and a decade of lost earning years behind them. The AMA reports that practice operating costs have increased 59 percent since 2001 while the Medicare conversion factor actually declined from $38.26 to $32.35.
The Three-Tier Payment Hierarchy
Reimbursement runs on a three-tier system that determines which patients physicians can afford to see. Commercial insurance pays well above Medicare rates; a RAND analysis of 2020 commercial claims found commercial prices averaged roughly 163 percent of Medicare for professional services (and 224 percent for hospital facility services). Medicare is the baseline at 100 percent. Medicaid pays on average about three-quarters of Medicare, 0.72 in 2019 and 0.75 in 2024 by KFF’s Medicaid-to-Medicare fee index, and only 0.66 for primary care. In some low-rate states the gap is far worse: Florida’s Medicaid fee schedule lists a 99213 visit at $34.29 for some provider categories, near the bottom of state Medicaid rates for that code, which range from about $35 to $165 with a median near $71.
The Provider’s Arithmetic: Starting Every Visit in the Red
Every discussion of reimbursement eventually has to confront the arithmetic that physicians face when the exam room door opens. A typical independent primary care practice carries roughly $150 to $250 in fully loaded overhead per patient visit, covering rent, staff salaries and benefits, malpractice insurance, electronic health record subscriptions, billing service fees, supplies, utilities, and practice management. That per-visit overhead is a function of the practice’s fixed costs divided by patient volume. It is not optional, and it does not decline when the payer does.
Set that overhead against the three-tier payment structure and the consequence is arithmetic, not ideology. A commercial 99213 visit at roughly $125 to $150 can cover overhead and leave margin. A Medicare 99213 at approximately $90 generally covers overhead and leaves a thin margin. A Medicaid 99213 at the bottom of the state range, such as Florida’s $34.29 rate, is a loss per encounter. The physician is in the red the moment the patient walks in. She makes it up on volume from better-paying patients, or she stops accepting the lower-paying ones, or she goes out of business. That is the entire economic logic of the access crisis described in Link 5.
Because payment is determined by what the encounter note documents, this arithmetic runs through the note. A visit that is genuinely complex but sparsely documented is billed at the lower, loss-making level. The note is where overhead meets payment, and where both begin the cascade.
The State Cost-Reimbursement Scissor
The squeeze on independent practice is not uniform across the country. It is worst in states where operating costs are rising and reimbursement is not. California is the clearest case.
Senate Bill 525, signed in October 2023 and, after delays, in effect from October 16, 2024, raised the minimum wage for healthcare workers in California to a floor that for large health systems started at $23 per hour and escalates toward $25 per hour by 2026, with other categories of healthcare employers on slower schedules that reach $25 between 2028 and 2034. The policy meaningfully raised the wage floor for medical assistants, front-office staff, and technicians who make up the single largest line item in most practice budgets. Medi-Cal physician fee-for-service rates did not rise to match. Commercial carriers did not rise to match. Medicare did not rise to match; in fact, the 2025 Medicare physician conversion factor fell 2.83 percent. The result is a healthcare wage floor roughly 40 to 50 percent above California’s general minimum wage against flat or declining reimbursement, a scissor that compresses practice margin until it disappears.
California is not alone in the pattern, but the intensity varies by state:
| Representative State | Healthcare / Direct-Care Wage Floor |
|---|
| Medicaid-to-Medicare Fee Ratio (approx.) | Reimbursement Trend |
| California | $23+/hour under SB 525 (2024-), phased to $25 |
| ~0.67 (Medi-Cal, 2024) | Flat Medi-Cal; 2025 Medicare CF cut 2.83% |
| New York | No state healthcare wage floor; minimum $16.50 in New York City area, $15.50 elsewhere (2025) |
| ~0.76 (2024) | Rose from 0.57 (2019) |
| Illinois | Chicago-area wage floors; no statewide healthcare-specific |
| ~0.63 (2024) | Flat |
| Washington | No statewide healthcare wage floor; state minimum $16.66 |
| ~0.64 (2024) | Declined from 0.69 (2019) |
| Texas | No state healthcare wage floor; state minimum $7.25 federal |
| ~0.63 (2024) | Flat |
| Florida | No state healthcare wage floor; state minimum $14.00 from Sept. 30, 2025 (phasing to $15) |
| ~0.64 (2024) | Rose modestly from 0.58 (2019); 99213 $34.29 for some provider types |
| Georgia | No state healthcare wage floor; state minimum $7.25 federal |
| ~0.83 (2024) | Flat |
(Medicaid-to-Medicare ratios from KFF’s Medicaid-to-Medicare fee index, all services, 2024, with 2019 values for trend; state minimum wages per Department of Labor and state labor agencies, 2025; California SB 525 text and Department of Industrial Relations. Ratios vary by service category.)
The pattern is that states imposing real wage-floor increases on healthcare labor have not paired those increases with corresponding Medicaid or Medi-Cal physician rate increases, and commercial carriers have not re-negotiated rates upward in proportion. Operating costs therefore climb while reimbursement stays flat. The scissor cuts hardest at practices with large Medicaid panels and concentrates the access collapse in exactly the populations public policy claims to protect. The encounter note is still the only mechanism through which any of this money flows, which is why any solution that does not fix the note simply watches the scissor close.
Sources: AMA Medicare Payment Analysis (2025); AMA Medicare conversion factor history; CMS Fee Schedule (2025); MGMA (2018); RAND Corporation (2022); Commonwealth Fund Payment Rate Analysis (2022); KFF Medicaid-to-Medicare Fee Index (2019, 2024); Florida AHCA Medicaid fee schedule; California SB 525 (2023); U.S. Department of Labor State Minimum Wage Data; California Department of Industrial Relations
LINK 5 OF 10
ACCESS DISPARITIES FOLLOW THE MONEY
When reimbursement falls below the cost of care, physicians stop accepting patients from underpaying programs. This is not callousness. It is economic survival. And the evidence shows access follows payment with mathematical precision.
The Medicaid Acceptance Gap
Only 74.3 percent of physicians accept new Medicaid patients, compared with 87.8 percent for Medicare and 96.1 percent for private insurance. MACPAC analysis of NCHS National Electronic Health Records Survey data (2017) found a persistent 20-plus percentage point gap between Medicaid and private insurance acceptance rates. The gap is far worse in specialty care: only 35.4 percent of psychiatrists accept Medicaid (Wen et al., JAMA Psychiatry, 2019). Geographic variation is extreme. Acceptance ranges from 42.2 percent in New Jersey to 99.4 percent in North Dakota, correlating directly with state-level reimbursement rates.
Care Is Concentrated Among a Shrinking Subset of Providers
Commonwealth Fund analysis of 2014 to 2019 data found that one-third of office-based primary care physicians account for 90 percent of all Medicaid office visits. Hsiang et al.’s systematic review of audit studies, published in Inquiry (2019), found Medicaid insurance was associated with an approximately 3.3-fold lower likelihood of successfully scheduling specialty care compared with private insurance.
The Hidden Labor Tax: Why Federally-Protected Patients Cost More to See
Reimbursement is only half of the economic equation. The other half is the labor cost per encounter, and federally-protected populations (Medicaid, Medicare dual-eligibles, certain federal programs) systematically consume more staff time per visit than commercially insured patients. The raw reimbursement comparison understates the gap because it does not net out this labor tax.
No-show rates are high across outpatient care. A 2018 systematic review by Dantas et al. put the worldwide average at about 23 percent, and Kheirkhah et al. (BMC Health Services Research, 2016) found 18.8 percent at a single VA clinic. Neither study breaks rates out by insurance, but practices with large Medicaid panels describe rates at the high end of that range, with considerable variation by specialty, geography, and social determinants. Each no-show represents not only the lost visit revenue but also the front-office time already spent booking, confirming, and preparing for the appointment. Practices that see predominantly Medicaid patients double-book defensively to absorb the volatility, which creates waiting-room crowding, workflow compression, and lower satisfaction for every patient in the panel.
The administrative labor per Medicaid encounter is also higher on the front end. Medicaid eligibility must be re-verified at least monthly in most states because coverage can drop for renewal paperwork, missed redeterminations, or address changes. Prior authorizations for diagnostic imaging, specialty referrals, and medications are more frequent for Medicaid patients, and the AMA’s 2024 survey found that physicians and their staff complete approximately 39 prior authorizations per physician per week and spend about 13 hours per week on prior-authorization processes; those hours are not evenly distributed across payers. Referral coordination, transportation arrangements, interpreter services, and social-determinant follow-ups also skew toward publicly insured patients. Patients more often arrive without up-to-date lab results, outside imaging, or complete medication lists, requiring staff to spend meaningful time reconstructing the clinical record before the physician can see the patient.
The downstream effect on the encounter is direct. More pre-visit labor plus more post-visit follow-up plus a higher no-show rate compounds into a structurally higher cost per Medicaid encounter, before the physician even opens the encounter note. Stack that higher labor cost against a reimbursement as low as $34 for a 99213 in the lowest-rate states and the per-visit economics are not salvageable on volume. The practice either loses money on each Medicaid encounter or stops accepting new Medicaid patients. This is not preference. It is arithmetic, and it is why the access gap in Link 5 follows payment so precisely. The note is the downstream artifact of an upstream economic problem, and the encounter note is still where the money flows.
The Proof That Higher Rates Fix Access
The ACA fee bump provided the closest thing to a controlled experiment. In 2013 and 2014, the Affordable Care Act temporarily raised Medicaid primary care rates to 100 percent of Medicare, fully federally funded. Polsky et al. (2015, NEJM) found a 7.7 percentage point increase in the probability of obtaining a Medicaid appointment across 10 states. Candon et al., published in JAMA Internal Medicine (2018), found the reverse when the bump ended: as fees fell, each $10 decline in primary care fees was associated with an approximately 1.7 percentage point drop in appointment availability.
Then 34 states let the rates expire. The Urban Institute projected that expiration would cut primary care fees for eligible providers by an average of 42.8 percent nationally, and Candon et al. later observed fee declines of about 29.5 percent across 10 states. Rather than make the rate increase permanent, government chose to build a parallel system, spending tens of billions of dollars a year on FQHCs and on supplemental payments tied to physician services instead.
Access follows payment because payment follows the note. A physician cannot afford a patient whose encounter note generates less revenue than the visit costs to deliver. The access gap is the direct output of the note-centered payment architecture.
Sources: MACPAC (2017); Commonwealth Fund (2022); Polsky et al., NEJM (2015); Candon et al., JAMA Internal Medicine (2018); Hsiang et al., Inquiry (2019); Wen et al., JAMA Psychiatry (2019); Urban Institute ACA Fee Bump Projection; Kheirkhah et al., BMC Health Services Research (2016); Dantas et al. systematic review (2018); AMA Prior Authorization Survey (2024)
LINK 6 OF 10
THE COLLAPSE OF INDEPENDENT MEDICINE
When reimbursement declines, overhead rises, and documentation burden intensifies, independent physicians face an impossible economic equation. The result has been the most dramatic restructuring of medical practice in American history.
The Numbers
The share of physicians in private practice has fallen from 60.1 percent in 2012 to 42.2 percent in 2024. The AMA’s 2024 Physician Practice Benchmark Survey of 5,000 physicians documented the crossover point between 2018 and 2020. For the first time in American history, more physicians were employed than independent. The Physician Advocacy Institute’s January 2024 report found an even starker reality: only 22.4 percent of physicians are truly independent, with 77.6 percent employed by hospitals, health systems, or corporate entities. Private equity-owned practices now employ 6.5 percent of physicians, up from 4.5 percent in 2022, according to the AMA.
Who Owns the Doctors Now
The consolidation has produced a short list of corporate employers at a scale no prior generation of American medicine has seen. Optum, the provider arm of UnitedHealth Group, employs or contracts with more than 90,000 physicians as of 2025, approximately 10 percent of the entire U.S. physician workforce. HCA Healthcare employs or affiliates with more than 45,000 physicians. Ascension carries roughly 49,000. Kaiser Permanente’s Permanente Medical Groups together employ roughly 25,000. A single insurer-owned entity is now the largest employer of physicians in the country, and the top five corporate employers together account for a double-digit share of all U.S. physicians. Independent medicine did not lose out in a fair contest. It lost out to entities with the balance-sheet depth to absorb the documentation, billing, denial-management, and payer-negotiation burden that the note-based payment system imposes on every practice in America.
The Rural and Community Hospital Closures
The consolidation wave is not limited to practice acquisition. When the economics of the encounter note no longer support independent practice, they also no longer support the small community hospital that depends on that practice for admissions and referrals. The Cecil G. Sheps Center for Health Services Research has tracked 154 rural hospital closures and conversions since 2010. The Center for Healthcare Quality and Payment Reform reports that more than 700 rural hospitals, roughly one in three nationwide, are currently at risk of closure, and Chartis found in 2025 that 46 percent of rural hospitals operate on negative margins. Nearly one quarter of rural obstetric units closed between 2011 and 2021; 382 rural hospitals stopped providing chemotherapy between 2014 and 2022. When a community hospital closes, its catchment population does not disappear. It is rerouted, often by an hour or more, to the nearest regional system, which is almost always a large corporate owner.
Why Physicians Sell: Economic Pressure More Than Preference
Physicians overwhelmingly prefer independence but cannot afford it. AMA survey data shows 70.8 percent of physicians who sold their practices cited the need to better negotiate higher payment rates with payers as important or very important. Bain & Company’s 2024 Frontline of Healthcare Survey reported that physicians in hospital-led settings expressed markedly lower satisfaction than those in physician-owned practices, with net promoter scores well below those of independent physicians.
The Patient Cost of Consolidation
Hospital acquisition of physician practices is associated with price increases without measurable improvements in quality. Peer-reviewed work by Capps, Dranove, and Ody found that prices for physician services rose approximately 14 percent following hospital acquisition of the practice. Baker, Bundorf, and Kessler found that vertical integration increased total health spending because higher prices were not offset by lower volume. KFF’s 2020 consolidation brief summarized the same evidence, finding hospital-physician consolidation resulted in average price increases of roughly 14 percent for physician services, with no measurable improvement in quality metrics. A Harvard-led study of private equity hospital acquisitions by Kannan, Bruch, and Song (JAMA, 2023) found hospital-acquired adverse conditions rose about 25 percent after acquisition, including 27 percent more falls and about 38 percent more central-line infections. A NORC survey found 61 percent of employed physicians have moderate or low autonomy to make referrals outside their ownership system, 47 percent face policies or financial incentives to adjust treatment to reduce costs, and 70 percent face incentives or penalties to see more patients per day.
The Physician Exodus the Consolidation Creates
Many physicians who sold their practices did so expecting stability. What they frequently encounter instead is an employer whose economics depend on maximizing visit volume per provider and on substituting lower-cost clinicians wherever scope of practice permits. The result is a second wave of departures, this time out of clinical medicine entirely. The Physicians Foundation’s 2024 Survey of America’s Physicians, fielded with 1,020 physicians along with residents and medical students, found that roughly six in ten physicians report burnout and nearly half report feelings of inappropriateness or disengagement. Medscape’s 2024 Physician Burnout and Depression Report surveyed more than 9,000 physicians and found 49 percent reporting burnout, with bureaucratic and administrative tasks the single most cited contributor. When the employed physician’s autonomy shrinks, their scope of supervision expands, and their documentation burden stays constant, the rational response is to leave. Every physician who leaves concentrates the same patient volume on a smaller remaining workforce, which further degrades the quality of every encounter note that remains.
Independent practice did not collapse because physicians stopped wanting it. It collapsed because the economics of a note-based payment system made independence impossible for anyone without the negotiating leverage of a hospital system behind them.
Sources: AMA Physician Practice Benchmark Survey (2024); Physician Advocacy Institute (2024); Becker’s Hospital Review on Optum physician employment (2025); Cecil G. Sheps Center for Health Services Research rural hospital closure data (2024); Center for Healthcare Quality and Payment Reform rural hospital risk analysis; Chartis 2025 Rural Health State-by-State; Bain & Company (2024); Capps, Dranove & Ody (2018); Baker, Bundorf & Kessler on vertical integration; KFF Consolidation Brief (2020); Physicians Foundation 2024 Survey of America’s Physicians; Medscape Physician Burnout and Depression Report (2024); Kannan, Bruch & Song, JAMA (2023); NORC / Physicians Advocacy Institute Survey (2023)
LINK 7 OF 10
THE FQHC WORKAROUND, A MULTIBILLION-DOLLAR TAXPAYER DETOUR
When private practices cannot afford to see Medicaid patients, those patients must go somewhere. Rather than adjust the reimbursement rates that drive the access gap, the federal government has built an increasingly parallel healthcare delivery system, funded by taxpayers at multiples of the cost of simply paying private practice physicians fairly.
The Scale of the Parallel System
Federally Qualified Health Centers now serve 32.4 million patients annually, roughly one in ten Americans. HRSA’s 2024 Uniform Data System reports 1,359 FQHC program awardees, and the health center network operates over 17,000 delivery sites, employs 326,000 full-time staff, and conducts about 139 million patient visits per year. Total FQHC revenue reached $49.6 billion in 2024, up from $12.7 billion in 2010, nearly a fourfold increase in 14 years. Federal Section 330 grant funding more than doubled from 2010 to 2019, rising from approximately $2.2 billion to $5.6 billion annually (HRSA budget records).
The Reimbursement Differential That Tells the Story
FQHCs receive a bundled per-visit payment under the Prospective Payment System that is well above what a private practice receives in Medicaid fee-for-service payment for the same visit. The 2025 Medicare FQHC PPS base rate is $202.65 per visit, with new patient rates at $271.88, while state Medicaid fee-for-service rates for a 99213 visit have a median near $71. Meanwhile, the Medicaid-to-Medicare physician fee ratio has stayed well below parity, at 0.72 in 2019 and 0.75 in 2024 by KFF’s fee index, and only 0.66 for primary care. FQHC revenue nearly quadrupled while the underlying rate structure barely moved.
The Total Taxpayer Cost
$49.6 BILLION. Total FQHC revenue in 2024 (KFF), supported by about $34 billion in HRSA grants over fiscal years 2018 to 2022 (GAO), alongside roughly $9.4 billion in state supplemental and directed payments tied to physician services (MACPAC).
States spend billions more annually on supplemental workaround payments. MACPAC’s January 2024 analysis found that states made roughly $1.6 billion in fee-for-service supplemental payments to physicians in 2021 and had approximately $7.8 billion in managed care directed payment arrangements tied to physician services as of February 2023, together about $9.4 billion in supplemental physician payments. Combined with an FQHC system whose revenue now approaches $50 billion, government is spending tens of billions of dollars annually on workaround structures rather than addressing the underlying Medicaid rate gap. No major government analysis has ever compared the total cost of simply raising Medicaid physician reimbursement to Medicare-equivalent rates versus the current combined cost of these parallel systems.
The workaround exists because policy chose to build a parallel system rather than fix the document that broke. That spending is the price of avoiding the encounter note rather than repairing it.
Sources: HRSA Uniform Data System (2024); KFF on FQHC revenue (2024); GAO-24-106815; CMS FQHC PPS Rates (2025); KFF Medicaid-to-Medicare Fee Index (2019, 2024); state Medicaid 99213 fee schedules; MACPAC Supplemental Payment Analysis (January 2024); NACHC Research
LINK 8 OF 10
THE ER AS AMERICA’S MOST EXPENSIVE PRIMARY CARE CLINIC
When patients cannot access primary care, because their physicians cannot afford to see them, because the FQHC is full, or because transportation and scheduling barriers interfere, they delay care until it becomes urgent. Then they go to the emergency room.
The Utilization Disparity
Medicaid patients use emergency departments at about 4.2 times the rate of privately insured patients. CDC NCHS Data Brief No. 401 (2021) reported ED visit rates per 100 persons of 97 for Medicaid, 45 for Medicare, 37 for uninsured, and 23 for private insurance. AHRQ HCUP data confirmed that by 2014, Medicaid became the largest payer for emergency department visits at 32 percent of all visits, surpassing private insurance. Medicaid ED visits increased 66.4 percent from 2006 to 2014.
The Cost Multiplier
Treating common conditions in an ER costs approximately 12 times more than in a physician’s office, according to UnitedHealth Group’s 2019 analysis of claims data, which put the average cost of treating 10 common primary care conditions in an ED at $2,032 versus $167 at a physician’s office. The RAND Corporation estimated that 13.7 to 27.1 percent of ED visits could be managed at retail clinics or urgent care centers. UnitedHealth Group puts the savings opportunity from avoidable ED visits by privately insured patients alone at $32 billion a year. The Oregon Health Insurance Experiment, the only randomized controlled trial of Medicaid coverage, found Medicaid increased ED use by 40 percent rather than substituting office visits.
The EMTALA Unfunded Mandate
EMTALA requires hospitals to treat all patients regardless of ability to pay. The Emergency Medical Treatment and Active Labor Act requires every Medicare-participating hospital to screen and stabilize anyone presenting to the ED. A widely cited 2003 AMA study of physician practice costs estimated the average emergency physician incurred approximately $138,300 per year in EMTALA-related bad debt, in 2003 dollars; ACEP has since cited this figure in its policy materials, though the underlying estimate has not been independently updated at that level of granularity. AHA data shows hospitals provided nearly $745 billion in uncompensated care from 2000 to 2020. Annual uncompensated care reached $42.67 billion in 2020, partially offset by approximately $15 billion in annual DSH payments, another taxpayer-funded workaround.
ED utilization at twelve times the cost of an office visit is the downstream cost of the access the note-based payment system could not deliver. Every avoidable ED visit is a note the primary care practice was not economically able to write.
Sources: CDC NCHS Data Brief #401 (2021); AHRQ HCUP Statistical Brief #227; UnitedHealth Group (2019); RAND Corporation / Health Affairs (Weinick et al., 2010); Taubman et al., Science (2014); AHA Uncompensated Care Data; MACPAC DSH Analysis
LINK 9 OF 10
INSURERS HAVE INDUSTRIALIZED CLAIM DENIAL
The encounter note’s role as the determinant of payment creates an adversarial dynamic between providers and payers. Insurers have systematically exploited the complexity of documentation requirements to deny, delay, and downcode claims at industrial scale. Providers, living paycheck to paycheck, cannot afford to fight back.
The Denial Machine
Nineteen percent of in-network claims on HealthCare.gov plans were denied in 2023, up from 16 percent the year before. KFF’s January 2025 analysis of CMS transparency files found that across HealthCare.gov insurers in 2023, approximately 73 million of 392 million in-network claims were denied. Among the largest insurers, rates ranged from Elevance Health at 23 percent to Blue Cross Blue Shield of Alabama at 35 percent; across all insurers they ran from 1 percent to 54 percent. ProPublica’s investigation revealed Cigna’s PXDX system, in which a single medical director denied approximately 60,000 claims in one month, spending an average of 1.2 seconds per case. In two months, Cigna doctors refused 300,000 claims using this automated denial system.
The Appeal Gap
Fewer than 1 percent of denied claims are appealed, yet a large share of those appeals succeed. KFF data shows approximately 376,527 internal appeals were filed out of roughly 73 million HealthCare.gov denials in 2023, an appeal rate well below 1 percent. Insurers upheld 56 percent of those appealed denials on internal review. In Medicare Advantage, a Health Affairs (2025) analysis of 2019 claims found 57 percent of initially denied claims were ultimately overturned. The HHS Office of Inspector General (2018) found Medicare Advantage plans reversed 75 percent of the denials that were appealed to them, most of them payment denials rather than prior authorization denials, and KFF found that 80.7 percent of appealed Medicare Advantage prior authorization denials were overturned in 2024. These numbers come from different datasets, denial types, and populations and should not be combined as a single range, but they point to a consistent conclusion: when providers have the capacity to appeal, a substantial share of denials are reversed. The denial system works in large part because providers cannot afford to fight it.
Defensive Undercoding: Leaving Money on the Table
The threat of denial and audit creates a chilling effect that causes systematic underbilling. AAPC has reported CMS error-rate data from 2004 in which 14.4 percent of claims were undercoded, and the pattern has not gone away. Medical billers and physicians know that coding aggressively, even when documentation supports higher levels, risks triggering audits, delays, and recoupment demands. The rational economic response is to code conservatively, accepting lower payment to avoid the far greater cost of a denied or audited claim. AMA prior authorization surveys show practices complete approximately 39 prior authorizations per physician per week, spending about 13 hours weekly on PA processes, yet KFF found that 93.6 percent of Medicare Advantage prior authorization requests were approved in 2023, and 81.7 percent of the denials that were appealed were overturned, making the exercise function largely as a delay mechanism rather than a clinical gatekeeping tool.
Pay by Intimidation: The Closed Loop That Locks Undercoding In
Defensive undercoding does not persist because physicians want lower reimbursement. It persists because the economics of the billing workflow actively punish physicians who try to code accurately. This is the closed loop we call “pay by intimidation,” and it is one of the most important and least discussed mechanisms in the cascade.
The loop runs as follows. A physician documents thoroughly and codes a visit at the level the encounter note supports. The claim goes out. The payer denies or downcodes the claim through automated review, often in seconds, often without reading the note. The claim now has to be appealed. Appeals are not free. A medical biller working at a typical commission of roughly 7 to 10 percent of collected revenue sees a denied claim as a negative-expected-value task. Representative appeal workflows take on the order of 30 to 60 minutes per claim by the time the biller pulls the encounter note, assembles supporting documentation, drafts and submits the appeal letter, tracks the status, and follows up. At standard biller labor rates, that is roughly $25 to $60 in labor cost for a claim that might ultimately recover $100. With a 10 percent commission on recovery, the biller collects $10 gross on a claim that cost $40 to appeal, a net loss of $30 per claim even when the appeal is successful.
The economic implication is precise and unforgiving. When appeals are individually unprofitable for the biller, the biller’s incentive is to advise the physician to stop coding at levels that trigger appeals. The practice shifts its coding downward to avoid denials, accepting lower revenue on every claim in exchange for a cleaner first-pass acceptance rate. The payer has achieved, through denial volume alone, exactly the outcome of lower payment, without ever having to argue the clinical merits of a single claim. The denial machine enforces undercoding indirectly, through the billing labor market, while never formally changing the stated fee schedule.
This is what pay by intimidation means in practice. The payers know the appeal math. The billers know the appeal math. The physicians learn the appeal math the hard way. Everyone is behaving rationally inside a system where the encounter note is the only instrument that determines payment and the payer controls the denial pipeline. The result is a systemic downward pressure on reimbursement that does not show up on any fee schedule and that no existing regulation prevents.
The loop closes at the encounter note. It begins there (the physician’s documentation sets the code), it is attacked there (the payer denies on the basis of the note), and it is defended there (the appeal is assembled from the note). Any intervention that does not change the economics of appeals at the encounter-note level leaves the intimidation mechanism intact. Part 2 of this paper describes the specific technical response: an auto-generated appeal built into the same platform that accurately codes the note in the first place, inverting the appeal math so that the payer no longer profits from automated denial.
Sources: KFF Claims Denial Analysis (2025), 2023 data; KFF Medicare Advantage prior authorization analyses (2023 and 2024 data); ProPublica “Uncovered” Investigation (2023); HHS OIG (2018, 2022); Health Affairs (2025); AMA Prior Authorization Survey (2024); AAPC, reporting CMS 2004 error-rate data; MGMA benchmarks on billing commission structure and claim-rework labor cost